(Updated November 2022)

Version 2.14

In this page

• MARCONI
• Version 2.12 (BDW A1 partition)

Input: 

(http://www.ks.uiuc.edu/Research/namd/utilities/)

STMV (virus) benchmark (1,066,628 atoms, periodic, PME)

Graphic 1: the NAMD performance (simulation time in ns/day) is reported vs. the increasing number of cores

 

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Input:  (http://www.ks.uiuc.edu/Research/namd/utilities/)
APOA1 - Acquaporin, (water channel) benchmark (92 224 atoms, periodic, PME)

APOA1 - Acquaporin, (water channel) benchmark (92 224 atoms, periodic, PME)

Table 1: Performance of pure MPI run 

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    Graphic 1: the NAMD performance (simulation time in ns/day) is reported vs. the increasing number of cores

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MARCONI (KNL- A2 partition)

nodes (48 core per node)